Cis-acting element prediction

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August undefined, 2024

WebPLACE is a database of motifs found in plant cis-acting regulatory DNA elements, which were collected from previously published reports. It originally covered vascular plants … WebOct 7, 2024 · Cis-acting element prediction results showed that the two gene families had similar responses to hormones and had the most responsive elements responsive to ABA followed by ethylene responsive.

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WebMay 6, 2005 · Search for documented motifs found in plant cis-acting regulatory DNA elements. Highlights: As of 2003, over 380 motifs and their variants were extracted … WebMay 27, 2024 · Cis-acting elements prediction. Analysis of cis-acting elements in the VvWRKYs promoters provided the basis for the understanding of potential regulation … d and d shop

Identification and validation of promoters and cis-acting …

WebJul 11, 2003 · These TFs bind to the DNA on specific cis-acting regulatory elements (CAREs) and orchestrate the initiation of transcription, which is one of the most important control points in the regulation of gene expression. ... Flow chart of the computational approaches to detect promoters and cis-regulatory elements. 1, Promoter prediction … WebAug 26, 2024 · PIN-formed (PIN) proteins are important auxin carriers that participate in the polar distribution of auxin in plants. In this study, 16 ZaPIN genes were identified from the whole genome of Zanthoxylum armatum DC. The physicochemical properties and structure of PIN proteins were determined, and the gene sequences and promoter regions were … WebSep 22, 2013 · Background Cis-acting elements are essential genomic sequences that control gene expression. In higher eukaryotes, a series of cis-elements function … birmingham bbc weather forecast

Study on the interaction preference between CYCD subclass and …

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WebSubmitting a sequence to a program which will look for transcription sites known by PlantCARE. PlantCARE, a database of plant cis-acting regulatory elements and a … WebJan 21, 2024 · Cis-acting element prediction showed that PvCML contained elements related to growth and development, response to abiotic stress and hormones. Moreover, the majority of PvCMLs showed different ... d and d short adventuresWebSep 1, 2024 · Cis-acting elements analysis suggested that most OsIDD gene transcripts could be induced by various abiotic stresses and phytohormones. ... More importantly, their expression profiles in different tissues/organs and cis-acting elements prediction, and interaction histone modifiers information were determined. Based on phylogenetic … birmingham basketball clubs

"WebPlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Besides the transcription motifs found on a sequence, it also offers a link to the EMBL entry that contains the full gene sequence as well as a description of the conditions in which a motif becomes functional. The information on these sites is given by ... " - Cis-acting element prediction

Cis-acting element prediction

Rare Variants Residing in Novel Cis-Acting Element in Visual …

http://plantpan.itps.ncku.edu.tw/ WebThe 1972 bp promoter sequence of VqMYB15 was submitted to PlantCARE for element prediction analysis. Citation 24 The results showed that the promoter sequence contained a large number of stress-response elements. ... There are some cis-acting elements that are associated with light in the promoter regions of genes. For example, it is known that ...

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WebCis-regulatory elements (CREs) ... Other programs created for the identification and prediction of cis-regulatory modules include: ... An example of a cis-acting regulatory sequence is the operator in the lac operon. This DNA sequence is bound by the lac repressor, which, in turn, prevents transcription of the adjacent genes on the same DNA ... WebThese are several methods for comprehensive cis element prediction. For example, Searching the genome using experimentally reported cis elements. (e.g. AGRIS and …

WebDec 23, 2024 · First, we have proposed an economical and efficient calculation method to predict a subclass of auxin response genes that combined the methods in recent similar studies [18,23] with the powerful computer programme, PRECISE (Prediction of Regulatory CIS-acting Elements), in the prediction of regulatory elements. Our method aims at … WebSequence-specific transcription factors (TFs) regulate gene expression by binding to cis-regulatory elements in promoter and enhancer DNA. While studies of TF-DNA binding …

WebThe cis-acting element CCAAT-box that NF-YC2 may bind to was mainly distributed at the −1495 bp promoter (Table 1). When the length of the ZmC4 NADP-ME promoter was … WebApr 7, 2024 · The prediction results of the cis-acting regulatory elements in the promoter region show that all BvSUTs contain light-responsive elements. Among them, the …

WebMay 11, 2024 · Functional prediction of MaLOXs. The cis-acting elements of the promoter combine with specific transcription factors to form transcription initiation complex and …

WebJan 28, 2024 · The cis-acting elements analysis showed that a lot of the cis-acting elements were implicated in stress and hormone response. Melon seedlings were treated with salt, low temperature, drought, and ABA, and then tissue-specific analysis of CCDs expression were performed on the root, stem, upper leaf, middle leaf, female flower, … birmingham bbc weatherWebApr 7, 2024 · The results of the prediction and analysis of the BrPAL promoter’s cis-acting elements indicate that BrPAL may respond to light, abiotic stress, and different hormones. Based on the UVA, FR, high-temperature, low-temperature, drought, salt stress, IAA, ABA, and MeJA treatments of PAL family genes, qRT-PCR expression analysis of purple leaf ... birmingham bbc good food showWebDatabase of motifs found in plant cis-acting regulatory DNA elements, all from previously published reports. It covers vascular plants only. Place contains a useful signal scan … birmingham bdo officeWebA single mRNA transcript includes all three enzyme-coding sequences and is called polycistronic. A cistron is equivalent to a gene. Figure 6.1. 1: Diagram of a segment of an E. coli chromosome containing the lac operon, as well as the lacI coding region. The various genes and cis- elements are not drawn to scale. birmingham bbc officeWebFeb 7, 2024 · Regulation of alternative splicing involves cis-acting elements, such as exonic/intronic splicing enhancers/silencers (ESE/S, ISE/S), and trans-acting factors, … d and d shirtsWebA cis -acting element for the sulfur response is reported for the Arabidopsis SULTR1;1 sulfate transporter gene ( Maruyama-Nakashita et al., 2005 ). The sulfur-responsive … birmingham bay wall lightsWebIn silico analysis of the rare variants and identification of cis-acting elements was determined using Human Splicing Finder (HSF), ESE finder, RESCUE-ESE and through … d and d shortbow